PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022077.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YB
Protein Properties Length: 181aa    MW: 18974 Da    PI: 5.0357
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022077.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.34.1e-5732128197
        NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                  vreqdr+lPian+srimkk+lP+n+ki+kdak+tvqecvsefisfvtseasdkcq+ekrktingddllwa+atlGfedy+epl++yl++yre+eg+ 
  Pbr022077.1  32 VREQDRYLPIANISRIMKKALPTNGKIAKDAKDTVQECVSEFISFVTSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLRIYLARYRETEGDA 128
                  69********************************************************************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-5331138IPR009072Histone-fold
SuperFamilySSF471136.21E-4035138IPR009072Histone-fold
PfamPF008082.8E-2838102IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-206684No hitNo description
PROSITE patternPS0068506985IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-2085103No hitNo description
PRINTSPR006151.3E-20104122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAEAPTSPAG GSHESGGEQS PQGGGGGGGG GVREQDRYLP IANISRIMKK ALPTNGKIAK  60
DAKDTVQECV SEFISFVTSE ASDKCQKEKR KTINGDDLLW AMATLGFEDY IEPLRIYLAR  120
YRETEGDAKG SARGGDGSSK GNAVPAMPGP SAQFVHQGAL NYGNPQEDYY VPLNNMGNGS  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A7e-4831123193NF-YB
4awl_B6e-4831123294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A6e-4831123294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378131.11e-131PREDICTED: nuclear transcription factor Y subunit B-1
SwissprotQ8VYK43e-77NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLM5XKX81e-107M5XKX8_PRUPE; Uncharacterized protein
STRINGPOPTR_0008s04440.16e-95(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.34e-73nuclear factor Y, subunit B8